feat(refactor): Document refactoring progress and phases in markdown

feat(scripts): Add backfill script for content_hash in cache tables

feat(scripts): Create recompute script for analysis_cache population

test(tests): Implement comprehensive tests for analysis module functions

fix(tests): Update CLI tests to assert errors on stderr instead of stdout

fix(tests): Adjust MCP integration tests to pass context parameter correctly

fix(tests): Modify service tests to return hash on save functions for consistency

.vscode/settings.json

@@ -24,6 +24,7 @@
         "/root/projects/finn-mcp/.venv/bin/python": true,
         "make": true,
         ".venv/bin/coverage": true,
-        ".venv/bin/pytest": true
+        ".venv/bin/pytest": true,
+        "python -m pytest": true
     }
 }